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These Healthy Chocolate Muffins taste like a brownie, with a sneaky veggie hidden inside. There’s no flour or oil required, so they are naturally gluten-free, and kids love them!

chocolate muffins in pan and on a plate.

This muffin recipe tastes like a cross between a chocolate cake and a brownie. You’d never know that there’s pumpkin puree hidden inside! (It’s for texture, not flavor.)

Instead of using dry ingredients, like white whole wheat flour or oat flour, this recipe is flourless, which means it’s also gluten-free. Almond butter and eggs work together to create a fluffy texture you’ll love, with no oil required.

These healthy muffins make a delicious breakfast or snack, when you need something quick to grab. 

Ingredients You’ll Need

healthy chocolate muffin ingredients labeled in glass bowls.

This pumpkin puree in this recipe adds extra nutrients and moisture, without adding a noticeable flavor. If you don’t have canned pumpkin on hand, you could swap it for mashed ripe banana or unsweetened applesauce, but keep in mind that both of those options will change the rich chocolate flavor. 

You could also use Greek yogurt as a substitute if you don’t need a dairy-free recipe. 

chocolate muffins sitting on a white counter.

How to Make Healthy Chocolate Muffins

​1. Mix the wet ingredients. 

In a large mixing bowl, combine the almond butter, pumpkin puree, eggs, coconut sugar, maple syrup, cacao powder, vanilla extract, baking soda, and salt.

Mix well, until the batter looks smooth. Fold in the chocolate chips, if you want a double chocolate muffin.

chocolate muffin batter mixed together in glass bowl.

2. Bake. 

Line a muffin tin with 12 liners, then use a 1/4 cup measure to scoop the batter into each spot. You should get 12 muffins from this recipe.

Sprinkle a few extra chocolate chips on top, if you’d like.

chocolate chips added to the batter and poured into muffin tin.

Bake in the oven at 350ºF for 25 minutes, or until the tops of the muffins rise and look dry on top. If the center of the muffin sinks significantly, that means they probably didn’t cook quite long enough.

You can also test the center of the muffin with a toothpick, if you prefer.

chocolate muffins in the pan before and after baking.

3. Enjoy!

Let the muffins cool in the pan for 20 minutes, then transfer them to a wire rack to finish cooling completely.

Serve the muffins at room temperature, then store any leftovers in an airtight container in the fridge for up to a week. 

chocolate muffin split open on a plate to show the fluffy texture.

Frequently Asked Questions

Do these muffins freeze well?

Yes, you can store the muffins in an airtight container in the freezer for up to 3 months. To thaw, place them in the fridge for up to 48 hours so they can soften again.

Can I use a different sweetener?

You can replace the maple syrup with honey if you prefer, but the honey flavor will be slightly more noticeable. I don’t recommend replacing the granulated sugar with a liquid sweetener, or you might not achieve the same texture, but you can use another granulated sugar if you need to. 

Do I have to use muffin liners? 

If you grease the pan with cooking spray or coconut oil, the muffins will not release quite as nicely. (The muffin liners guarantee they’ll come of out the pan easily.) Without the liners, you’ll probably need to run a knife around the edges to help them release from the pan. 

What if I have different ingredients to use?

You can swap the cacao powder for cocoa powder if that’s what you keep on hand, and you can also use peanut butter instead of almond butter if you prefer. (The peanut butter creates a slightly drier texture.) If you want to try another veggie puree, you can toss raw zucchini in a blender to create a zucchini puree that could be used instead of the pumpkin. 

Want to boost the flavor?

You can add a teaspoon of espresso powder, if you keep it on hand, to emphasize the chocolate taste. For a less-sweet muffin, you can also cut back on the maple syrup, for a darker chocolate flavor.

Looking for more healthy muffin recipes? Try Blender Banana Oatmeal Muffins, Raspberry Chocolate Chip Almond Flour Muffins, or Chocolate Zucchini Muffins, for another variation.

chocolate muffins in pan and on a plate.

Healthy Chocolate Muffins (with Pumpkin!)

4.93 from 82 votes
Healthy Chocolate Muffins have a fluffy texture, without using flour or oil! They taste like a cross between chocolate cake and brownies, with a sneaky veggie hidden inside.
prep5 mins cook25 mins total30 mins
Servings:12

Ingredients
 
 

Instructions

  • Preheat the oven to 350ºF and line a muffin tin with 12 muffin liners. In a large bowl, stir together the almond butter, pumpkin puree, eggs, maple syrup, coconut sugar, cacao powder, vanilla extract, baking soda, and salt. Once the batter looks smooth, fold in the chocolate chips.
  • Use a ¼ cup measure to divide the batter between the 12 prepared muffin cups. Sprinkle a few extra chocolate chips on top, if you like.
  • Bake at 350ºF until the muffins have risen, and the center looks dry, about 25 minutes.
  • Let the muffins to cool in the pan for 20 minutes, then transfer them to a wire rack to cool completely. You can serve them at room temperature, or store them in an airtight container in the fridge for up to a week.

Video

Notes

  • Nutrition information is for 1 of 12 muffins, including the chocolate chips. This information is automatically calculated and is just an estimate, not a guarantee.
  • See the full post above for substitution tips. You can use any other nut butter or fruit/veggie puree in this recipe for a similar texture, but the flavor will change depending on what you use.
  • I haven’t had the chance to test a vegan version of this recipe yet, so I’m not sure if there’s a successful swap for eggs.
Update Note: This recipe used to be called “Paleo Double Chocolate Pumpkin Muffins,” but was updated in January 2023 with a shorter name and updated photos. The recipe has not changed, but you can see the original version here.

Nutrition

Calories: 230kcal | Carbohydrates: 20g | Protein: 6g | Fat: 16g | Saturated Fat: 3g | Polyunsaturated Fat: 3g | Monounsaturated Fat: 8g | Trans Fat: 0.01g | Cholesterol: 27mg | Sodium: 122mg | Potassium: 282mg | Fiber: 4g | Sugar: 11g | Vitamin A: 1631IU | Vitamin C: 0.4mg | Calcium: 94mg | Iron: 2mg
Course: Breakfast
Cuisine: American
Keyword: healthy chocolate muffins

If you try these healthy chocolate muffins, please leave a comment and star rating below letting me know how you like them.

Megan Gilmore leaning on her white countertop.

Megan Gilmore

Hi, I’m Megan. A former fast food junkie turned best-selling cookbook author. I create healthy recipes made with simple ingredients to make your life easier.

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Comments

  1. Like all Detoxinista recipes, absolutely fabulous! Quick question though – just curious why the nutritional information says they contain trans fat? I didn’t realize any of these ingredients had trans fat in them and, as that is something we try to avoid, I would love to know where it is coming from. THANK YOU!!!!

    1. Hi Deanna! My guess is that the almond butter that the nutrition calculator used was NOT an all-natural version, made with only almonds. That’s why the nutrition information isn’t always 100% accurate, because I don’t choose which brands of ingredients it uses for its automated calculations. I can’t imagine any ingredient in this recipe would have trans fat as long as you’re using an all natural nut butter.

      1. Thank you so much for your reply! I can honestly say that your recipes are truly among the best. I find myself turning to them on repeat time and time again because they’re so healthy and delicious. I also have so much trust that anything you share will be great, and it always is. Thank you so much!

  2. Made this recipe two different times for some friends & everyone loved it! The second time I changed the pumpkin for banana- everyone still loved it! I will say the banana ones turned out a little sweeter than the pumpkin batch. Love so many recipes on this site and they’re soo good 😋

  3. This is the best recipe! Two toddler girls are begging for another batch to be made this week. Now I just have to keep my husband from eating all of them first! Thanks!!

  4. These are outstanding! Thank you for this exceptional recipe. My kids devoured these. You are truly a magician, Megan!

  5. Love this. The texture and flavor are both great, which I’ve found to be uncommon with gluten free muffins. They’re also reasonably filling as a snack, which makes me less inclined to eat two in a go. Great recipe. Thank you!

  6. These are amazing! So easy and fast to make (though mine had to bake longer, that’s mostly just how my oven is but I also didn’t want them to deflate in the middle.) Basically brownies, but a little healthier.

  7. My whole family loves this muffin! I made it with the almond butter the first time around and it was great. My 4 year old tried to eat the whole batch in one sitting. The next time I made it I used pecan butter as I had a lot of pecans on hand and no almond butter. ( I made the pecan butter with 4 cups pecans, 1/4 c maple syrup, 1/2tsp cinnamon and pinch of salt blended in a food processor) It really made these muffins so freaking good! I highly recommend trying the pecan butter!!! This recipe is amazing and so easy